What program? Is the program even made to be bootable? Can't make a program bootable if its not meant to run outside of an OS. Could maybe include it in a BartPE boot disc, however.
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You would need teh specific boot files for Win98. But the thing is they are only able to be used to start the install. Win98 is to old to create a livecd version. So if you really want to install Win98 go to bootdisk.com and get the Win98 floppy. If you are trying to make it a bootable OS running from the CD. Not possible.
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Making a program bootable question 
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